FTP Download

You can download via a browser from our FTP site, use a script, or even use rsync from the command line.

Globus

For rapid bulk download of files, the Ensembl FTP site is available as an end point in the Globus Online system. In order to access the data you need to sign up for an account with Globus, install the Globus Connect Personal software and setup a personal endpoint to download the data. The Ensembl data is hosted at the EMBL-EBI end point called “Shared EMBL-EBI public endpoint”. Data from the Ensembl FTP site can then be found under the "/gridftp/ensemblorg/pub" directory within the EMBL-EBI public end point.

Custom data sets

If you want to filter or customise your download, please try Biomart, a web-based querying tool.

API Code

If you do not have access to git, you can obtain our latest API code as a gzipped tarball:

Download complete API for this release

Note: the API version needs to be the same as the databases you are accessing, so please use git to obtain a previous version if querying older databases.

Database dumps

Entire databases can be downloaded from our FTP site in a variety of formats. Please be aware that some of these files can run to many gigabytes of data.

Looking for MySQL dumps to install databases locally? See our web installation instructions for full details.

Each directory on http://ftp.ensembl.org contains a README file, explaining the directory structure.

Multi-species data

Database
Comparative genomics	MySQL	EMF	MAF	BED	XML	Ancestral Alleles
BioMart	MySQL	-	-	-	-	-
Stable ids	MySQL	-	-	-	-	-

Single species data

Popular species are listed first. You can customise this list via our home page.

	Species	DNA (FASTA)	cDNA (FASTA)	CDS (FASTA)	ncRNA (FASTA)	Protein sequence (FASTA)	Annotated sequence (EMBL)	Annotated sequence (GenBank)	Gene sets	Other annotations	Whole databases	Variation (GVF)	Variation (VCF)	Variation (VEP)	Regulation (GFF)	Data files	BAM/BigWig
Y	Human Homo sapiens	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	Regulation (GFF)	Regulation data files	BAM/BigWig
Y	Mouse Mus musculus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	Regulation (GFF)	Regulation data files	BAM/BigWig
Y	Zebrafish Danio rerio	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	-	-	BAM/BigWig
	Abingdon island giant tortoise Chelonoidis abingdonii	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	African ostrich Struthio camelus australis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Agassiz's desert tortoise Gopherus agassizii	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Algerian mouse Mus spretus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Alpaca Vicugna pacos	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Alpine marmot Marmota marmota marmota	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Amazon molly Poecilia formosa	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	American beaver Castor canadensis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	American bison Bison bison bison	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	American black bear Ursus americanus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	American mink Neovison vison	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Angola colobus Colobus angolensis palliatus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Arabian camel Camelus dromedarius	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Arctic ground squirrel Urocitellus parryii	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Argentine black and white tegu Salvator merianae	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Armadillo Dasypus novemcinctus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Asian bonytongue Scleropages formosus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Asiatic black bear Ursus thibetanus thibetanus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Atlantic cod Gadus morhua	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Atlantic herring Clupea harengus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Atlantic salmon Salmo salar	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Australian saltwater crocodile Crocodylus porosus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Ballan wrasse Labrus bergylta	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Barramundi perch Lates calcarifer	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Beluga whale Delphinapterus leucas	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Bengalese finch Lonchura striata domestica	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Bicolor damselfish Stegastes partitus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Black snub-nosed monkey Rhinopithecus bieti	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Blind barbel Sinocyclocheilus anshuiensis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Blue tilapia Oreochromis aureus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Blue tit Cyanistes caeruleus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Blue whale Balaenoptera musculus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Blue-crowned manakin Lepidothrix coronata	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Blue-ringed sea krait Laticauda laticaudata	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Blunt-snouted clingfish Gouania willdenowi	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Bolivian squirrel monkey Saimiri boliviensis boliviensis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Bonobo Pan paniscus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Brazilian guinea pig Cavia aperea	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Brown trout Salmo trutta	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Budgerigar Melopsittacus undulatus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Burrowing owl Athene cunicularia	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Burton's mouthbrooder Haplochromis burtoni	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Bushbaby Otolemur garnettii	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	C.intestinalis Ciona intestinalis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	C.savignyi Ciona savignyi	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Caenorhabditis elegans	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	California sea lion Zalophus californianus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Canada lynx Lynx canadensis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Capuchin Cebus capucinus imitator	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Cat Felis catus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	-	-	BAM/BigWig
	Central bearded dragon Pogona vitticeps	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Chacoan peccary Catagonus wagneri	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Channel bull blenny Cottoperca gobio	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Channel catfish Ictalurus punctatus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Chicken Gallus gallus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	-	-	BAM/BigWig
	Chilean tinamou Nothoprocta perdicaria	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Chimpanzee Pan troglodytes	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	-	-	BAM/BigWig
	Chinese hamster CHOK1GS Cricetulus griseus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Chinese hamster CriGri Cricetulus griseus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Chinese hamster PICR Cricetulus griseus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Chinese medaka Oryzias sinensis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Chinese softshell turtle Pelodiscus sinensis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Chinook salmon Oncorhynchus tshawytscha	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Climbing perch Anabas testudineus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Clown anemonefish Amphiprion ocellaris	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Coelacanth Latimeria chalumnae	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Coho salmon Oncorhynchus kisutch	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Collared flycatcher Ficedula albicollis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Common canary Serinus canaria	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Common carp Cyprinus carpio	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Common carp german mirror Cyprinus carpio	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Common carp hebao red Cyprinus carpio	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Common carp huanghe Cyprinus carpio	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Common kestrel Falco tinnunculus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Common snapping turtle Chelydra serpentina	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Common wall lizard Podarcis muralis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Common wombat Vombatus ursinus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Coquerel's sifaka Propithecus coquereli	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Cow Bos taurus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	-	-	BAM/BigWig
	Crab-eating macaque Macaca fascicularis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Damara mole rat Fukomys damarensis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Dark-eyed junco Junco hyemalis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Daurian ground squirrel Spermophilus dauricus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Degu Octodon degus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Denticle herring Denticeps clupeoides	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Dingo Canis lupus dingo	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Dog Canis lupus familiaris	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	-	-	BAM/BigWig
	Dog - Basenji Canis lupus familiaris	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Dog - Boxer Canis lupus familiaris	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	-	-	BAM/BigWig
	Dog - Great Dane Canis lupus familiaris	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Dolphin Tursiops truncatus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Domestic yak Bos grunniens	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Donkey Equus asinus asinus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Drill Mandrillus leucophaeus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Drosophila melanogaster	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Duck Anas platyrhynchos platyrhynchos	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Eastern brown snake Pseudonaja textilis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Eastern buzzard Buteo japonicus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Eastern happy Astatotilapia calliptera	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Eastern spot-billed duck Anas zonorhyncha	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Electric eel Electrophorus electricus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Elephant Loxodonta africana	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Elephant shark Callorhinchus milii	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Emu Dromaius novaehollandiae	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Eurasian eagle-owl Bubo bubo	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Eurasian red squirrel Sciurus vulgaris	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Eurasian sparrowhawk Accipiter nisus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	European seabass Dicentrarchus labrax	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Ferret Mustela putorius furo	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Fugu Takifugu rubripes	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Gelada Theropithecus gelada	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Giant panda Ailuropoda melanoleuca	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Gibbon Nomascus leucogenys	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	-	-	-
	Gilthead seabream Sparus aurata	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Goat Capra hircus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	-	-	BAM/BigWig
	Goat (black bengal) Capra hircus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Golden Hamster Mesocricetus auratus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Golden eagle Aquila chrysaetos chrysaetos	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Golden pheasant Chrysolophus pictus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Golden snub-nosed monkey Rhinopithecus roxellana	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Golden-collared manakin Manacus vitellinus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Golden-line barbel Sinocyclocheilus grahami	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Goldfish Carassius auratus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Goodes thornscrub tortoise Gopherus evgoodei	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Gorilla Gorilla gorilla gorilla	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Gouldian finch Erythrura gouldiae	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Great Tit Parus major	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Great spotted kiwi Apteryx haastii	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Greater amberjack Seriola dumerili	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Greater bamboo lemur Prolemur simus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Greater horseshoe bat Rhinolophus ferrumequinum	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Green anole Anolis carolinensis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Guinea Pig Cavia porcellus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Guppy Poecilia reticulata	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Hagfish Eptatretus burgeri	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Hedgehog Erinaceus europaeus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Helmeted guineafowl Numida meleagris	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Horned golden-line barbel Sinocyclocheilus rhinocerous	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Horse Equus caballus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	-	-	BAM/BigWig
	Huchen Hucho hucho	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Hybrid - Bos Indicus Bos indicus x Bos taurus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Hybrid - Bos Taurus Bos indicus x Bos taurus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Hyrax Procavia capensis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Indian cobra Naja naja	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Indian glassy fish Parambassis ranga	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Indian medaka Oryzias melastigma	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Indian peafowl Pavo cristatus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Japanese medaka HNI Oryzias latipes	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Japanese medaka HSOK Oryzias latipes	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Japanese medaka HdrR Oryzias latipes	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Japanese quail Coturnix japonica	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Javanese ricefish Oryzias javanicus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Jewelled blenny Salarias fasciatus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Kakapo Strigops habroptila	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Kangaroo rat Dipodomys ordii	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Koala Phascolarctos cinereus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Komodo dragon Varanus komodoensis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Lamprey Petromyzon marinus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Large yellow croaker Larimichthys crocea	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Leishan spiny toad Leptobrachium leishanense	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Leopard Panthera pardus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Lesser Egyptian jerboa Jaculus jaculus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Lesser hedgehog tenrec Echinops telfairi	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Lion Panthera leo	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Little spotted kiwi Apteryx owenii	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Live sharksucker Echeneis naucrates	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Long-tailed chinchilla Chinchilla lanigera	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Lumpfish Cyclopterus lumpus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Lyretail cichlid Neolamprologus brichardi	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Ma's night monkey Aotus nancymaae	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Macaque Macaca mulatta	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	-	-	BAM/BigWig
	Mainland tiger snake Notechis scutatus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Makobe Island cichlid Pundamilia nyererei	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Mallard Anas platyrhynchos	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Mangrove rivulus Kryptolebias marmoratus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Medium ground-finch Geospiza fortis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Meerkat Suricata suricatta	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Megabat Pteropus vampyrus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Mexican tetra Astyanax mexicanus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Microbat Myotis lucifugus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Midas cichlid Amphilophus citrinellus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Mongolian gerbil Meriones unguiculatus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Monterrey platyfish Xiphophorus couchianus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Mouse 129S1/SvImJ Mus musculus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Mouse A/J Mus musculus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Mouse AKR/J Mus musculus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Mouse BALB/cJ Mus musculus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Mouse C3H/HeJ Mus musculus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Mouse C57BL/6NJ Mus musculus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Mouse CAST/EiJ Mus musculus castaneus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Mouse CBA/J Mus musculus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Mouse DBA/2J Mus musculus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Mouse FVB/NJ Mus musculus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Mouse LP/J Mus musculus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Mouse Lemur Microcebus murinus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Mouse NOD/ShiLtJ Mus musculus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Mouse NZO/HlLtJ Mus musculus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Mouse PWK/PhJ Mus musculus musculus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Mouse WSB/EiJ Mus musculus domesticus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Mummichog Fundulus heteroclitus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Muscovy Duck (domestic type) Cairina moschata domestica	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Naked mole-rat female Heterocephalus glaber	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Naked mole-rat male Heterocephalus glaber	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Narwhal Monodon monoceros	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	New Caledonian crow Corvus moneduloides	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Nile tilapia Oreochromis niloticus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Northern American deer mouse Peromyscus maniculatus bairdii	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Northern pike Esox lucius	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Northern spotted owl Strix occidentalis caurina	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Ocean sunfish Mola mola	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Okarito brown kiwi Apteryx rowi	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Olive baboon Papio anubis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Opossum Monodelphis domestica	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	-	-	BAM/BigWig
	Orange clownfish Amphiprion percula	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Orbiculate cardinalfish Sphaeramia orbicularis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Oriental scops-owl Otus sunia	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Pachon cavefish Astyanax mexicanus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Painted turtle Chrysemys picta bellii	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Paramormyrops kingsleyae	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Periophthalmus magnuspinnatus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Pig Sus scrofa	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	-	-	BAM/BigWig
	Pig - Bamei Sus scrofa	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Pig - Berkshire Sus scrofa	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Pig - Hampshire Sus scrofa	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Pig - Jinhua Sus scrofa	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Pig - Landrace Sus scrofa	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Pig - Largewhite Sus scrofa	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Pig - Meishan Sus scrofa	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Pig - Pietrain Sus scrofa	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Pig - Rongchang Sus scrofa	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Pig - Tibetan Sus scrofa	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Pig - Wuzhishan Sus scrofa	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Pig USMARC Sus scrofa	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Pig-tailed macaque Macaca nemestrina	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Pika Ochotona princeps	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Pike-perch Sander lucioperca	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Pinecone soldierfish Myripristis murdjan	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Pink-footed goose Anser brachyrhynchus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Platyfish Xiphophorus maculatus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Platypus Ornithorhynchus anatinus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	-	-	BAM/BigWig
	Polar bear Ursus maritimus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Prairie vole Microtus ochrogaster	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Rabbit Oryctolagus cuniculus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Rainbow trout Oncorhynchus mykiss	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Rat Rattus norvegicus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	-	-	BAM/BigWig
	Red fox Vulpes vulpes	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Red-bellied piranha Pygocentrus nattereri	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Reedfish Erpetoichthys calabaricus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Ring-necked pheasant Phasianus colchicus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Round goby Neogobius melanostomus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Ruff Calidris pugnax	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Rufous-capped babbler Cyanoderma ruficeps	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Ryukyu mouse Mus caroli	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Saccharomyces cerevisiae	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	-	-	-
	Sailfin molly Poecilia latipinna	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Sheep Ovis aries	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	-	-	BAM/BigWig
	Sheep (texel) Ovis aries	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	-	-	BAM/BigWig
	Sheepshead minnow Cyprinodon variegatus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Shortfin molly Poecilia mexicana	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Shrew Sorex araneus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Shrew mouse Mus pahari	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Siamese fighting fish Betta splendens	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Siberian musk deer Moschus moschiferus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Silver-eye Zosterops lateralis melanops	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Sloth Choloepus hoffmanni	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Small tree finch Camarhynchus parvulus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Sooty mangabey Cercocebus atys	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Sperm whale Physeter catodon	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Spiny chromis Acanthochromis polyacanthus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Spoon-billed sandpiper Calidris pygmaea	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Spotted gar Lepisosteus oculatus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Squirrel Ictidomys tridecemlineatus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Steppe mouse Mus spicilegus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Stickleback Gasterosteus aculeatus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Sumatran orangutan Pongo abelii	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	-	-	BAM/BigWig
	Superb fairywren Malurus cyaneus samueli	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Swainson's thrush Catharus ustulatus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Swamp eel Monopterus albus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Swan goose Anser cygnoides	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Tarsier Carlito syrichta	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Tasmanian devil Sarcophilus harrisii	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Tetraodon Tetraodon nigroviridis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	-	-	-
	Three-toed box turtle Terrapene carolina triunguis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Tiger Panthera tigris altaica	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Tiger tail seahorse Hippocampus comes	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Tongue sole Cynoglossus semilaevis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Tree Shrew Tupaia belangeri	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	Tropical clawed frog Xenopus tropicalis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Tuatara Sphenodon punctatus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Turbot Scophthalmus maximus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Turkey Meleagris gallopavo	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	-	-	BAM/BigWig
	Turquoise killifish Nothobranchius furzeri	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Ugandan red Colobus Piliocolobus tephrosceles	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Upper Galilee mountains blind mole rat Nannospalax galili	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Vaquita Phocoena sinus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Vervet-AGM Chlorocebus sabaeus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Wallaby Notamacropus eugenii	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	-
	West African mud turtle Pelusios castaneus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Western mosquitofish Gambusia affinis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	White-throated sparrow Zonotrichia albicollis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	White-tufted-ear marmoset Callithrix jacchus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Wild yak Bos mutus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Yarkand deer Cervus hanglu yarkandensis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Yellow-billed parrot Amazona collaria	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Yellowtail amberjack Seriola lalandi dorsalis	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Zebra finch Taeniopygia guttata	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	GVF	VCF	VEP	-	-	BAM/BigWig
	Zebra mbuna Maylandia zebra	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig
	Zig-zag eel Mastacembelus armatus	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV RDF JSON	MySQL	-	-	VEP	-	-	BAM/BigWig

To facilitate storage and download all databases are GNU Zip (gzip, *.gz) compressed.

About the data

The following types of data dumps are available on the FTP site.

FASTA

FASTA sequence databases of Ensembl gene, transcript and protein model predictions. Since the FASTA format does not permit sequence annotation, these database files are mainly intended for use with local sequence similarity search algorithms. Each directory has a README file with a detailed description of the header line format and the file naming conventions.

DNA: Masked and unmasked genome sequences associated with the assembly (contigs, chromosomes etc.).; The header line in an FASTA dump files containing DNA sequence consists of the following attributes : coord_system:version:name:start:end:strand This coordinate-system string is used in the Ensembl API to retrieve slices with the SliceAdaptor.
CDS: Coding sequences for Ensembl or ab initio predicted genes.
cDNA: cDNA sequences for Ensembl or ab initio predicted genes.
Peptides: Protein sequences for Ensembl or ab initio predicted genes.
RNA: Non-coding RNA gene predictions.

Annotated sequence

Flat files allow more extensive sequence annotation by means of feature tables and contain thus the genome sequence as annotated by the automated Ensembl genome annotation pipeline. Each nucleotide sequence record in a flat file represents a 1Mb slice of the genome sequence. Flat files are broken into chunks of 1000 sequence records for easier downloading.

EMBL: Ensembl database dumps in EMBL nucleotide sequence database format
GenBank: Ensembl database dumps in GenBank nucleotide sequence database format

MySQL

All Ensembl MySQL databases are available in text format as are the SQL table definition files. These can be imported into any SQL database for a local installation of a mirror site. Generally, the FTP directory tree contains one directory per database. For more information about these databases and their Application Programming Interfaces (or APIs) see the API section.

GTF

Gene sets for each species. These files include annotations of both coding and non-coding genes. This file format is described here.

GFF3

GFF3 provides access to all annotated transcripts which make up an Ensembl gene set. This file format is described here.

EMF flatfile dumps (comparative data)

Alignments of resequencing data are available for several species as Ensembl Multi Format (EMF) flatfile dumps. The accompanying README file describes the file format.

Also, the same format is used to dump whole-genome multiple alignments as well as gene-based multiple alignments and phylogentic trees used to infer Ensembl orthologues and paralogues. These files are available in the ensembl_compara database which will be found in the mysql directory.

MAF (comparative data)

MAF files are provided for all pairwise alignments containing human (GRCh38), and all multiple alignments. The MAF file format is described here.

GVF (variation data)

GVF (Genome Variation Format) is a simple tab-delimited format derived from GFF3 for variation positions across the genome. There are GVF files for different types of variation data (e.g. somatic variants, structural variants etc). For more information see the "README" files in the GVF directory.

VCF (variation data)

VCF (Variant Call Format) is a text file format containing meta-information lines, a header line, and then data lines each containing information about a position in the genome. This file format can also contain genotype information on samples for each position. More details about the format and its specifications are available here.

VEP (variation data)

Compressed text files (called "cache files") used by the Variant Effect Predictor tool. More information about these files is available here.

BED format files (comparative data)

Constrained elements calculated using GERP are available in BED format. For more information see the accompanying README file.

BED format is a simple line-based format. The first 3 mandatory columns are:

chromosome name (may start with 'chr' for compliance with UCSC)
start position. This is a 0-based position
end position.

More information on the BED file format...

Tarball

The entire Ensembl API is gzipped and concatenated into a single TAR file. This is updated daily.

FTP Download

Globus

Custom data sets

API Code

Database dumps

Multi-species data

Single species data

About the data

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